Open data visualization and sharing for genomic epidemiology

In partnership with

Public Health EnglandEuropean Centre for Disease Prevention and ControlMicrobiology SocietyNorwegian Institute of Public Health

Tracing the spread of carbapenem-resistant Klebsiella pneumoniae

David S et al. 2019.

Epidemic of carbapenem-resistant Klebsiella pneumoniae in Europe is driven by nosocomial spread. Nature Microbiology 2058-5276. (doi:10.1038/s41564-019-0492-8)

Streptococcus pneumoniae PMEN2

Croucher NJ et al. 2014.

Variable recombination dynamics during the emergence, transmission and 'disarming' of a multidrug-resistant pneumococcal clone. BMC Biology 12:49

West African Ebola epidemic (2013-2016)

Dudas G. et al. 2017.

Virus genomes reveal factors that spread and sustained the Ebola epidemic. Nature. 2017 Apr 20;544(7650):309-315. (doi:10.1038/nature22040).

Y-chromosome Human Phylogeny

Hallast P. et al. 2015.

The Y-chromosome tree bursts into leaf: 13,000 high-confidence SNPs covering the majority of known clades. Mol Biol Evol 32(3):661

Salmonella Typhi

Wong V. et al. 2015.

Phylogeographical analysis of the dominant multidrug-resistant H58 clade of Salmonella Typhi identifies inter- and intra-continental transmission events. Nature Genetics 47(6):632