SARS-CoV-2 in the UK

Continuous evaluation of the lineages circulating in the UK
(updated weekly)
Continuous evaluation of the lineages circulating in the UK
(updated weekly)
Continuous evaluation of the lineages circulating around the globe.
(updated weekly)
Epidemic of carbapenem-resistant Klebsiella pneumoniae in Europe is driven by nosocomial spread. Nature Microbiology 2058-5276. (doi:10.1038/s41564-019-0492-8)
https://www.nature.com/articles/s41564-019-0492-8Variable recombination dynamics during the emergence, transmission and 'disarming' of a multidrug-resistant pneumococcal clone. BMC Biology 12:49
http://www.ncbi.nlm.nih.gov/pubmed/24957517Phylogeographic reconstruction of the West African Ebola epidemic based 1610 complete genomes. Nature 1476-4687 (doi:10.1038/nature22040).
http://www.nature.com/nature/journal/vaop/ncurrent/full/nature22040.htmlZika virus in the Americas: Early epidemiological and genetic findings. Science 352(6283):345-9.
http://science.sciencemag.org/content/352/6283/345.article-infoThe Y-chromosome tree bursts into leaf: 13,000 high-confidence SNPs covering the majority of known clades. Mol Biol Evol 32(3):661
http://www.ncbi.nlm.nih.gov/pubmed/25468874Evidence for several waves of global transmission in the seventh cholera pandemic. Nature 477:462
http://www.ncbi.nlm.nih.gov/pubmed/21866102Evolution of MRSA during hospital transmission and intercontinental spread.
http://www.ncbi.nlm.nih.gov/pubmed/20093474Directional gene flow and ecological separation in Yersinia enterocolitica. M Gen 1(3): doi:10.1099/mgen.0.000030.
http://mgen.microbiologyresearch.org/content/journal/mgen/10.1099/mgen.0.000030Phylogeographical analysis of the dominant multidrug-resistant H58 clade of Salmonella Typhi identifies inter- and intra-continental transmission events. Nature Genetics 47(6):632
http://www.ncbi.nlm.nih.gov/pubmed/25961941